piRNA Browser Manual
What is the piRNA Browser?
piRNA browser provides searching motif into given sequences. It marks each piRNAs and given motif with different colors. So it makes easy find motifs into sequences.
How it works ?
Double click to html and it will work! Please sure about your internet connection. All sequences which you need in html file. If you have new sequence file, please contact with Burak.
How does it look and What are there search options?
1. search piRNA by name : Label for writing piRNA name
2. Get : When click ‘Get’ button, it will return only given piRNA with searched given motifs.
3. Reset : It clear searched by piRNA name.
4. search piRNA region by motif : Label for writing motif
5. Search : When click ‘Search’ button, it will return only founded motif in sequence.
6. Help : piRNA Browser Manual 7. Options :
7.1. Upstream : It returns only founded motif in upstream of sequence.
7.2. Upstream : It returns only founded motif in downstream of sequence.
7.3. piRNA : It returns only founded motif in piRNA of sequence.
7.4. Includes All Motif : It returns founded all motif what before searched in sequence.
8. Contain all motifs : It returns which contain all given motifs
9. Sorting
9.1. PI-INPUT-CHR : Its shorting type
9.2. 200 : Number of result
10 Motifs: Searched before motifs
10. What is piRNA Browser : piRNA Browser Manual
11. Results
piRNA browser provides searching motif into given sequences. It marks each piRNAs and given motif with different colors. So it makes easy find motifs into sequences.
How it works ?
Double click to html and it will work! Please sure about your internet connection. All sequences which you need in html file. If you have new sequence file, please contact with Burak.
How does it look and What are there search options?
1. search piRNA by name : Label for writing piRNA name
2. Get : When click ‘Get’ button, it will return only given piRNA with searched given motifs.
3. Reset : It clear searched by piRNA name.
4. search piRNA region by motif : Label for writing motif
5. Search : When click ‘Search’ button, it will return only founded motif in sequence.
6. Help : piRNA Browser Manual 7. Options :
7.1. Upstream : It returns only founded motif in upstream of sequence.
7.2. Upstream : It returns only founded motif in downstream of sequence.
7.3. piRNA : It returns only founded motif in piRNA of sequence.
7.4. Includes All Motif : It returns founded all motif what before searched in sequence.
8. Contain all motifs : It returns which contain all given motifs
9. Sorting
9.1. PI-INPUT-CHR : Its shorting type
9.2. 200 : Number of result
10 Motifs: Searched before motifs
10. What is piRNA Browser : piRNA Browser Manual
11. Results